| The Two Gates | Into The Electric Castle |
| Day Three: Pain | The Human Equation |
| Dragon On The Sea | Universal Migrator Part I & II |
| The First Man On Earth | Universal Migrator Part I & II |
| Another Time, Another Space (feat. Edward Reekers, Edwin Balogh, Damian Wilson, Marcela Bovio, Robert Soeterboek, Fish, Simone Simons, Anneke van Giersbergen, John JayCee Cuijpers, Mark Jansen, George Oosthoek, John de Lancie) [Live] | Electric Castle Live And Other Tales |
| The Two Gates (feat. Edwin Balogh, Damian Wilson, John JayCee Cuijpers) [Live] | Electric Castle Live And Other Tales |
| Ayreon's Fate | The Final Experiment |
| Eyes of Time | Ayreonauts Only |
| The Garden Of Emotions | Into The Electric Castle |
| Amazing Flight | Into The Electric Castle |
| Cosmic Fusion | Into The Electric Castle |
| Another Time, Another Space | Into The Electric Castle |
| Tunnel Of Light | Into The Electric Castle |
| This Human Equation (feat. Simone Simons, Marcela Bovio, Caroline Westendorp, Joost van den Broek) | Talk of the Town |
| The Garden of Emotions (Live) | The Garden of Emotions (Live) |
| Welcome To The New Dimension | Into The Electric Castle |
| Eyes Of Time | The Metal Museum Vol. 11: Progressive Metal |
| The Prediction | The Theory Of Everything |
| Dark Medicine | The Theory Of Everything |
| The Blackboard (reprise) | The Theory Of Everything |
| The Theory of Everything (part 3) | The Theory Of Everything |
| Quantum Chaos | The Theory Of Everything |
| Potential | The Theory Of Everything |
| A Reason to Live | The Theory Of Everything |
