| The Garden Of Emotions | Into The Electric Castle |
| Eyes of Time | Ayreonauts Only |
| Ayreon's Fate | The Final Experiment |
| The Two Gates (feat. Edwin Balogh, Damian Wilson, John JayCee Cuijpers) [Live] | Electric Castle Live And Other Tales |
| Another Time, Another Space (feat. Edward Reekers, Edwin Balogh, Damian Wilson, Marcela Bovio, Robert Soeterboek, Fish, Simone Simons, Anneke van Giersbergen, John JayCee Cuijpers, Mark Jansen, George Oosthoek, John de Lancie) [Live] | Electric Castle Live And Other Tales |
| The First Man On Earth | Universal Migrator Part I & II |
| Dragon On The Sea | Universal Migrator Part I & II |
| Day Three: Pain | The Human Equation |
| The Two Gates | Into The Electric Castle |
| Out Of The White Hole | Universal Migrator Part I & II |
| Day Twenty: Confrontation | The Human Equation |
| Day Twelve: Trauma | The Human Equation |
| Day Fourteen: Pride | The Human Equation |
| Day Fifteen: Betrayal | The Human Equation |
| Day Sixteen: Loser | The Human Equation |
| Day Eleven: Love | The Human Equation |
| Age Of Shadows (Live) | Ayreon Universe (Live) |
| Magnetism (Live) (feat. Anneke van Giersbergen, Tommy Karevik, Marco Hietala) | Ayreon Universe (Live) |
| Magnetism (feat. Troy Donockley, Tommy Karevik, Marko Hietala) | The Theory of Everything |
| The Awareness | The Final Experiment |
| Eyes Of Time | The Final Experiment |
| Prologue | The Final Experiment |
| The Banishment | The Final Experiment |
| Ye Courtyard Minstrel Boy | The Final Experiment |
