| The Note | The Theory Of Everything |
| The Uncertainty Principle | The Theory Of Everything |
| Dark Energy | The Theory Of Everything |
| A Reason to Live | The Theory Of Everything |
| Potential | The Theory Of Everything |
| Quantum Chaos | The Theory Of Everything |
| The Theory of Everything (part 3) | The Theory Of Everything |
| The Blackboard (reprise) | The Theory Of Everything |
| Dark Medicine | The Theory Of Everything |
| The Prediction | The Theory Of Everything |
| Eyes Of Time | The Metal Museum Vol. 11: Progressive Metal |
| Welcome To The New Dimension | Into The Electric Castle |
| The Garden of Emotions (Live) | The Garden of Emotions (Live) |
| This Human Equation (feat. Simone Simons, Marcela Bovio, Caroline Westendorp, Joost van den Broek) | Talk of the Town |
| Tunnel Of Light | Into The Electric Castle |
| Another Time, Another Space | Into The Electric Castle |
| Cosmic Fusion | Into The Electric Castle |
| Amazing Flight | Into The Electric Castle |
| The Garden Of Emotions | Into The Electric Castle |
| Eyes of Time | Ayreonauts Only |
| Ayreon's Fate | The Final Experiment |
| The Two Gates (feat. Edwin Balogh, Damian Wilson, John JayCee Cuijpers) [Live] | Electric Castle Live And Other Tales |
| Another Time, Another Space (feat. Edward Reekers, Edwin Balogh, Damian Wilson, Marcela Bovio, Robert Soeterboek, Fish, Simone Simons, Anneke van Giersbergen, John JayCee Cuijpers, Mark Jansen, George Oosthoek, John de Lancie) [Live] | Electric Castle Live And Other Tales |
| The First Man On Earth | Universal Migrator Part I & II |
