| The Visitation | The Theory Of Everything |
| Beneath The Waves | 01011001 |
| Listen To The Waves | The Final Experiment |
| Waracle | The Final Experiment |
| Nature's Dance | The Final Experiment |
| Dawn Of A Million Souls | Mall Fight OST, Part II: Inspirations |
| Into the Black Hole | Ayreonauts Only |
| Day One: Vigil | The Human Equation |
| String Theory | The Theory Of Everything |
| Everybody Dies | The Source |
| The Day That the World Breaks Down | The Source |
| Sea of Machines | The Source |
| All That Was | The Source |
| Out of the White Hole: A) M31 B) Planet y C) Search Continues | Universal Migrator, Pt. 2: Flight of the Universal Migrator |
| Day Seven: Hope | The Human Equation |
| Day Thirteen: Sign | The Human Equation |
| Alive! | The Theory Of Everything |
| Day Nine: Playground | The Human Equation |
| Day Eight: School | The Human Equation |
| Prologue The Blackboard | The Theory Of Everything |
| The Stranger from Within | Actual Fantasy |
| Aquatic Race | The Source |
| Condemned To Live | The Source |
| Star of Sirrah | The Source |
